Posts tagged with writing

World of Bioinformatics Quest: Character generation

January 28th, 2008

In World of Bioinformatics QuestTM (WoBQ) having the right character that suits your style is essential. You may think that a hot shot Rubyist is the coolest class to be, but remember that you have to play this character for the next 50 years. In general it’s better to be a character that you’ll enjoy playing, rather than one that will get you more publications but have less fun with. This page will guide you through all the parts of character generation for WoBQ.

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Five resources for beginning bioinformaticians

October 4th, 2007

Lists

Back from a weeks holiday in Hungary just in time for my, hopefully, last ever year as a student. Last month I had a flurry of work completing a report and poster for the end of my second year, but now I’m aiming to work hard and try and get at least two papers out in my final year: in time to write up my thesis.

But now, to coincide with the beginning of the academic year, and the time that new PhD and Masters students start, I thought I would share some the resources that I found useful through out the course of my own Masters degree, then first two years of PhD.

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The Cambridge LaTeX thesis template

March 21st, 2007

If you’ve ever used LaTeX you’ll probably agree with me when I say that it makes writing documents much easier. A lot of the problems encountered using WYSIWYG editors, images jumping around, or manually numbering figures, just don’t exist.

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Twelve reasons to favour simplicity over complexity

March 20th, 2007

I think simple is better. Statistics says so too. Statistics says that you’ll probably read the first two paragraphs of this post, look at the pictures then go elsewhere. So I’d simply better get to my point. In terms of attention spans, computer code and (statistical) explanations, and possibly everything in general, I think it’s always better to favour simplicity over complexity.

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Bioinformatics : Sometimes you have to write, and not computer code either

March 2nd, 2007

You love making programs that reveal yourself as a programming god. You produce results that demonstrate you are, quite obviously, the greatest scientist of our generation. You show these to everyone in your office/corridor/family, they all appreciate your magnificence. After a few talks at conferences comes the bit you’ve been avoiding - writing everything up.

I think I’m fair in saying that you went into bioinformatics for something other than writing reports and papers. At some point though, you have to.

Set a daily goal
When I have to write, I set a goal of 500 words a day. Even if they are complete nonsense, which they usually are. Writing, like everything else, gets better with practice. My writing usually becomes more coherent, the more I do. Once you’ve got everything written, even if it’s rubbish, you’ll feel much better. You can start editing for clarity later.

Throw away as much as possible
You’ve written huge amounts of text, so why bin all the effort? Because you’re writing for other people. Everyone one has to expend energy to read your work. Think about how dull it is for you reading badly written text. It’s a boring activity that you have to force yourself to do. Now what if the document had instead been composed with the reader in mind? The point is put across in clear and simple terms. Every paragraph, sentence, word is there because it has to be.

Learn how to write well
Writing, like presenting, is a skill that doesn’t receive as much attention as it should. Particularly in science where, quite rightly, the emphasis is scientific method and ability. But once you have your results, you need to communicate them. I’ve found that becoming better at writing makes you more confident, making writing more enjoyable and a less arduous task.
To this end, I recommend Strunk and White, “The elements of style”. Fortunately, this book is also available online.
Also check out this page for a practical introduction to writing.

Finally, if you’re taking one thing away from this post, please take this.

Vigorous writing is concise. A sentence should contain no unnecessary words, a paragraph no unnecessary sentences, for the same reason that a drawing should have no unnecessary lines and a machine no unnecessary parts. This requires not that the writer make all his sentences short, or that he avoid all detail and treat his subjects only in outline, but that every word tell.
William Strunk Jr., Elements of Style

Forty two words were thrown away in revising this post. Coincidence?